SNP Profiles of PA 195 [PER] View Data

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_Input profile	CC	GG	CG	CC	TT	CC	CC	TT	CC	CC	AA	AG	CC	AG
1._PA_195_[PER]	CC	GG	CG	CC	TT	CC	CC	TT	CC	CC	AA	AG	CC	AG
2._PA_195_[PER]	CC	GG	CG	CC	TT	CC	CC	TT	CC	CC	AA	AG	CC	AG
3._PA_195_[PER]	CC	GG	CG	CC	TT	CC	CC	TT	CC	CC	AA	AG	CC	AG
4._GC-05-166-4-19	CC	GG	CG	CC	TT	CC	CC	TT	CC	CC	AA	AG	CC	AG
5._GC-05-166-4-19	CC	GG	CG	CC	TT	CC	CC	TT	CC	CC	AA	AG	CC	AG
6._GC-05-166-4-19	CC	GG	CG	CC	TT	CC	CC	TT	CC	CC	AA	AG	CC	AG
7._GC-05-166-4-19	CC	GG	CG	CC	TT	CC	CC	TT	CC	CC	AA	AG	CC	AG
8._RUQ_1642	_	GG	CG	CC	_	_	_	TT	_	_	_	_	CC	AG
9._RUQ_1642	_	GG	CG	CC	_	_	_	TT	_	_	_	_	CC	AG
10._RUQ_1642	CC	GG	CG	CC	TT	CC	CC	TT	CC	CC	AA	AG	CC	AG
11._RUQ_1642	CC	GG	CG	CC	TT	CC	CC	TT	CC	CC	AA	AG	CC	AG
12._PA_195_[PER]	CC	GG	CG	CC	TT	CC	CC	TT	CC	_	AA	AG	CC	AG
13._GC-05-166-4-19	GG	GG	CG	GG	AA	CC	GG	AA	_	_	AA	AG	GG	AG
14._RUQ_1642	GG	GG	CG	GG	AA	CC	GG	AA	_	_	AA	AG	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	CG	CC	CC	GG	GG	AG	TT	CC	CG	GG	CC	AA
1._PA_195_[PER]	CC	AA	CG	CC	CC	GG	GG	AG	TT	CC	CG	GG	CC	AA
2._PA_195_[PER]	CC	AA	CG	CC	CC	GG	GG	AG	TT	CC	CG	GG	CC	AA
3._PA_195_[PER]	CC	AA	CG	CC	CC	GG	GG	AG	TT	CC	CG	GG	CC	AA
4._GC-05-166-4-19	CC	AA	CG	CC	CC	GG	GG	AG	TT	CC	CG	GG	CC	AA
5._GC-05-166-4-19	CC	AA	CG	CC	CC	GG	GG	AG	TT	CC	CG	GG	CC	AA
6._GC-05-166-4-19	CC	AA	CG	CC	CC	GG	GG	AG	TT	CC	CG	GG	CC	AA
7._GC-05-166-4-19	CC	AA	CG	CC	CC	GG	GG	AG	TT	CC	CG	GG	CC	AA
8._RUQ_1642	_	_	_	_	CC	GG	GG	_	TT	CC	CG	GG	CC	AA
9._RUQ_1642	_	_	_	_	CC	GG	GG	_	TT	CC	CG	GG	CC	AA
10._RUQ_1642	CC	AA	CG	CC	CC	GG	GG	AA	TT	CC	CG	GG	CC	AA
11._RUQ_1642	CC	AA	CG	CC	CC	GG	GG	AA	TT	CC	CG	GG	CC	AA
12._PA_195_[PER]	CC	AA	CG	CC	CC	GG	GG	AA	TT	CC	CG	GG	CC	AA
13._GC-05-166-4-19	GG	AA	CG	GG	GG	CC	CC	_	AA	CC	CG	CC	_	AA
14._RUQ_1642	GG	AA	CG	GG	GG	CC	CC	_	AA	CC	CG	CC	_	AA

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CC	GG	CC	CC	CC	GG	AC	AT	GG	X_X	X_X
1._PA_195_[PER]	AA	GG	AA	CC	GG	CC	CC	CC	GG	AC	AT	GG	X_X	X_X
2._PA_195_[PER]	AA	GG	AA	CC	GG	CC	CC	CC	GG	AC	AT	GG	X_X	X_X
3._PA_195_[PER]	AA	GG	AA	CC	GG	CC	CC	CC	GG	AC	AT	GG	X_X	X_X
4._GC-05-166-4-19	AA	GG	AA	CC	GG	CC	CC	CC	GG	AC	AT	GG	X_X	X_X
5._GC-05-166-4-19	AA	GG	AA	CC	GG	CC	CC	CC	GG	AC	AT	GG	X_X	X_X
6._GC-05-166-4-19	AA	GG	AA	CC	GG	CC	CC	CC	GG	AC	AT	GG	X_X	X_X
7._GC-05-166-4-19	AA	GG	AA	CC	GG	CC	CC	CC	GG	AC	AT	GG	X_X	X_X
8._RUQ_1642	AA	_	AA	CC	GG	CC	CC	CC	GG	AC	_	_	X_X	X_X
9._RUQ_1642	AA	_	AA	CC	GG	CC	CC	CC	GG	AC	_	_	X_X	X_X
10._RUQ_1642	AA	GG	AA	CC	GG	CC	CC	CC	GG	AC	AT	GG	X_X	X_X
11._RUQ_1642	AA	GG	AA	CC	GG	CC	CC	CC	GG	AC	AT	GG	X_X	X_X
12._PA_195_[PER]	AA	GG	AA	CC	GG	_	CC	CC	GG	AC	AT	GG	X_X	X_X
13._GC-05-166-4-19	_	GG	AA	GG	GG	GG	CC	GG	CC	AC	AT	GG	X_X	X_X
14._RUQ_1642	_	GG	AA	GG	GG	GG	CC	GG	CC	AC	AT	GG	X_X	X_X

Input profile: PA_195_[PER]

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Mars Center for Cocoa Science, Brazil

Location: 5419 5 > FP

Dapeng Zhang, 2016

1._PA_195_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5419 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._PA_195_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5419 1 > FP

Dapeng Zhang, 2016

3._PA_195_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5419 2 > FP

Dapeng Zhang, 2016

4._PA_195_[PER] GC-05-166-4-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

5._PA_195_[PER] GC-05-166-4-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

6._PA_195_[PER] GC-05-166-4-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._PA_195_[PER] GC-05-166-4-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

8._PA_195_[PER] RUQ_1642

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

9._PA_195_[PER] RUQ_1642

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

10._PA_195_[PER] RUQ_1642

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._PA_195_[PER] RUQ_1642

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._PA_195_[PER]

98.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B C165 T1

Dapeng Zhang, 2016

13._PA_195_[PER] GC-05-166-4-19

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 5, Block: 4, Rep: 19, Tree: 4

Notes: MCCS_Structure_refs_above_0.9membership

14._PA_195_[PER] RUQ_1642

51.4 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25